cytominer gallery

Installation

Install R and RStudio.

Download this sqlite file into ~/Downloads (required by the vignette single_cell_analysis).

Install the cytominergallery package from GitHub:

# install.packages("devtools")
devtools::install_github("cytomining/cytominergallery", dependencies = TRUE, build_vignettes = TRUE)

You may need to do run that again in order to build the vignettes correctly (seems like a bug in install_github):

devtools::install_github("cytomining/cytominergallery", dependencies = TRUE, build_vignettes = TRUE, force = TRUE)

Occasionally, the Suggests dependencies may not get installed, depending on your system, so you’d need to install those explicitly.

Browse vignettes (launches in default browser):

browseVignettes()

Search for “Vignettes in package cytominergallery” and click on the link HTML to view the vignettes.