Index

_

_arrow_type_cast_if_specified() (in module cytotable.utils) _build_file_index() (in module cytotable.warehouse.images) _build_path() (in module cytotable.sources) _build_stable_image_crop_id() (in module cytotable.warehouse.images) _build_stable_object_id() (in module cytotable.warehouse.images) _build_stable_source_image_id() (in module cytotable.warehouse.images) _cache_cloudpath_to_local() (in module cytotable.utils) _column_sort() (in module cytotable.utils) _concat_join_sources() (in module cytotable.convert) _concat_source_group() (in module cytotable.convert) _crop_ome_arrow() (in module cytotable.warehouse.images) _default_parsl_config() (in module cytotable.utils) _duckdb_reader() (in module cytotable.utils) _expand_path() (in module cytotable.utils) _extract_image_key_fields() (in module cytotable.warehouse.images) _extract_key_fields() (in module cytotable.warehouse.images) _extract_npz_to_parquet() (in module cytotable.utils) _file_is_more_than_one_line() (in module cytotable.sources) _filter_source_filepaths() (in module cytotable.sources) _find_matching_segmentation_path() (in module cytotable.warehouse.images) _gather_sources() (in module cytotable.sources) _gather_tablenumber_checksum() (in module cytotable.utils) _generate_pagesets() (in module cytotable.utils) _get_cytotable_version() (in module cytotable.utils) _get_source_filepaths() (in module cytotable.sources) _get_table_columns_and_types() (in module cytotable.convert)

_get_table_keyset_pagination_sets() (in module cytotable.convert) _infer_source_datatype() (in module cytotable.sources) _infer_source_group_common_schema() (in module cytotable.convert) _join_source_pageset() (in module cytotable.convert) _local_image_io_path() (in module cytotable.warehouse.images) _natural_sort() (in module cytotable.utils) _normalize_file_value() (in module cytotable.warehouse.images) _parsl_loaded() (in module cytotable.utils) _prep_cast_column_data_types() (in module cytotable.convert) _prepare_join_sql() (in module cytotable.convert) _prepend_column_name() (in module cytotable.convert) _read_ome_arrow() (in module cytotable.warehouse.images) _relative_index_key() (in module cytotable.warehouse.images) _require_ome_arrow() (in module cytotable.warehouse.images) _resolve_image_columns() (in module cytotable.warehouse.images) _resolve_indexed_path() (in module cytotable.warehouse.images) _run_export_workflow() (in module cytotable.convert) _set_tablenumber() (in module cytotable.convert) _source_pageset_to_parquet() (in module cytotable.convert) _sqlite_mixed_type_query_to_parquet() (in module cytotable.utils) _strip_null_fields_from_type() (in module cytotable.warehouse.images) _strip_null_fields_from_value() (in module cytotable.warehouse.images) _unwrap_source() (in module cytotable.utils) _unwrap_value() (in module cytotable.utils) _validated_bbox_values() (in module cytotable.warehouse.images) _write_parquet_table_with_metadata() (in module cytotable.utils)

A

add_object_id_to_profiles_frame() (in module cytotable.warehouse.images)

B

BBoxColumns (class in cytotable.warehouse.images) by_basename (cytotable.warehouse.images.FileIndex attribute)

by_relative (cytotable.warehouse.images.FileIndex attribute) by_stem (cytotable.warehouse.images.FileIndex attribute)

C

catalog() (in module cytotable.warehouse.iceberg) cloud_glob() (in module cytotable.utils) config (in module cytotable.presets) convert() (in module cytotable.convert) cytotable.convert module cytotable.exceptions module cytotable.sources module

cytotable.utils module cytotable.warehouse.access module cytotable.warehouse.iceberg module cytotable.warehouse.images module CytoTableException

D

DatatypeException

describe_iceberg_warehouse() (in module cytotable.warehouse.iceberg)

E

evaluate_futures() (in module cytotable.utils)

F

FileIndex (class in cytotable.warehouse.images)

find_anndata_metadata_field_names() (in module cytotable.utils)

I

image_crop_table_from_joined_chunk() (in module cytotable.warehouse.images)

L

list_iceberg_tables() (in module cytotable.warehouse.iceberg)

list_tables() (in module cytotable.warehouse.access)

M

map_pyarrow_type() (in module cytotable.utils) module cytotable.convert cytotable.exceptions cytotable.sources cytotable.utils cytotable.warehouse.access cytotable.warehouse.iceberg cytotable.warehouse.images

N

NoInputDataException

O

object_id() (in module cytotable.warehouse.images)

P

Parsl_AppBase_init_for_docs() (in module cytotable.utils)

profile_with_images_frame() (in module cytotable.warehouse.images)

R

read_iceberg_table() (in module cytotable.warehouse.iceberg)

read_table() (in module cytotable.warehouse.access) resolve_bbox_columns() (in module cytotable.warehouse.images)

S

SchemaException

source_image_table_from_joined_chunk() (in module cytotable.warehouse.images)

T

TinyCatalog (class in cytotable.warehouse.iceberg)

W

write_iceberg_warehouse() (in module cytotable.warehouse.iceberg)

X

x_max (cytotable.warehouse.images.BBoxColumns attribute)

x_min (cytotable.warehouse.images.BBoxColumns attribute)

Y

y_max (cytotable.warehouse.images.BBoxColumns attribute)

y_min (cytotable.warehouse.images.BBoxColumns attribute)