Examples

The following example notebooks are provided to help you get started with CytoTable.

• CytoTable mise en place (general overview)
  • Phase 1: Cells are imaged by microscopes, with optional fluorescence staining
  • Phase 2: CellProfiler segments cells and measures numeric features
  • Phase 3: CytoTable harmonizes the feature datasets that CellProfiler generates
• CytoTable from the cloud (using cloud-based data sources)
  • Using CytoTable with cloud-based CSV’s
  • Using CytoTable with cloud-based SQLite databases