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CytoDataFrame

CytoDataFrame logo CytoDataFrame logo

CytoDataFrame extends the familiar pandas DataFrame interface to let researchers view and analyze single-cell morphological profiles alongside their corresponding microscopy images and segmentation masks — all within a Jupyter notebook.

Key capabilities:

  • Display cell images inline with profile data in Jupyter
  • Link numerical features directly to visual representations
  • Overlay segmentation masks for quality inspection
  • Built on top of pandas for full compatibility with existing workflows

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