coSMicQC

coSMicQC (Single-cell Morphology Quality Control) identifies and removes low-quality cells from image-based profiling datasets before downstream analysis. It catches common problems such as over-segmented nuclei, poorly segmented cells, and imaging artifacts.

Key capabilities:

• Flag over-segmented, under-segmented, and poorly focused cells
• Apply threshold-based or z-score-based QC criteria
• Generate summary reports of QC outcomes
• Integrate seamlessly with CytoTable and Pycytominer workflows

View documentation → · View on GitHub →

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