copairs

copairs is a Python package for evaluating the quality of morphology profiles by measuring how well a perturbation’s profile can be retrieved relative to controls. It implements mean Average Precision (mAP) and related metrics widely used in the image-based profiling community.

Key capabilities:

• Define matched pairs based on experimental metadata
• Compute mean Average Precision (mAP) for retrieval assessment
• Evaluate intra- vs. inter-group morphological similarity
• Scale efficiently to large screening datasets

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