ZEDprofiler
ZEDprofiler extracts morphological features directly from 3D volumetric images, including anisotropic voxel spacing correction — no GPU required.
Problem: Classical profiling tools extract only 2D features, leaving organoid, cleared-tissue, and z-stack experiments without a CPU-efficient extractor.
Key capabilities:
- Extract features from 3D volumetric (z-stack) single-cell images
- Multi-channel fluorescence microscopy support
- Anisotropic voxel spacing correction for accurate 3D measurements
- Modular, extensible architecture for custom feature sets
- CPU-optimized for high-throughput processing without GPU dependency