zedprofiler
zedprofiler is a CPU-first toolkit for extracting morphological features from 3D volumetric microscopy images. It is designed for high-content and high-throughput workflows where classical segmentation-and-measurement pipelines need to scale to single-cell features in z-stacks.
Key capabilities:
- Extract features from 3D volumetric (z-stack) single-cell images
- Multi-channel fluorescence microscopy support
- Anisotropic voxel spacing correction for accurate 3D measurements
- Modular, extensible architecture for custom feature sets
- CPU-optimized for high-throughput processing without GPU dependency