iceberg-bioimage

iceberg-bioimage scans any image store into a versioned Apache Iceberg catalog that directly exports Cytomining-compatible Parquet warehouses.

Problem: Raw bioimaging archives have no standard catalog — finding, versioning, and joining images to downstream data requires bespoke scripts per lab.

Key capabilities:

• Scan image stores into canonical ScanResult objects
• Publish image metadata with PyIceberg for versioned, queryable catalogs
• Export Cytomining-compatible Parquet warehouses for profiling workflows
• Validate profile tables against microscopy join contracts
• Supports Zarr, OME-TIFF, and Parquet source formats

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