iceberg-bioimage
iceberg-bioimage is a Python package that catalogs bioimaging data using Apache Iceberg. It scans image stores across formats, publishes structured metadata tables, and exports layouts compatible with the Cytomining profiling ecosystem — bridging raw image archives and downstream analysis pipelines.
Key capabilities:
- Scan image stores into canonical
ScanResultobjects - Publish image metadata with PyIceberg for versioned, queryable catalogs
- Export Cytomining-compatible Parquet warehouses for profiling workflows
- Validate profile tables against microscopy join contracts
- Supports Zarr, OME-TIFF, and Parquet source formats