You're reading the documentation for a development version. For the latest released version, please have a look at v0.1.5.

Examples

List of examples

• ContaminationDetector in action
• coSMicQC in a nutshell
• set a path for the parquet-based dataset
• (in this case, CellProfiler SQLite data processed by CytoTable)
• set a context directory for images associated with the dataset
• create a cosmicqc CytoDataFrame (single-cell DataFrame)
• display the dataframe
• JUMP UMAP analysis with coSMicQC
  • Outline
  • Define utility functions for use within this notebook
  • Merge single-cell compartment data into one table
  • Process merged single-cell data using coSMicQC
  • Prepare data for analysis with pycytominer